Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009786.1 Corchorus olitorius cultivar O-4 contig09818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4043
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:1907 original size:15 final size:15

Alignment explanation


    Indices: 1887--1917  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1877 ATTTTTTGAA

                           
       1887 TTTTCTCTAAAATTC
          1 TTTTCTCTAAAATTC

                           
       1902 TTTTCTCTAAAATTC
          1 TTTTCTCTAAAATTC

             
       1917 T
          1 T

       1918 GCAAACTTCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.19, G:0.00, T:0.55


Consensus pattern (15 bp):   
TTTTCTCTAAAATTC
Done.