Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009788.1 Corchorus olitorius cultivar O-4 contig09820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3809
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:3638 original size:22 final size:22

Alignment explanation


    Indices: 3599--3641  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3589 TCATCATTCG

                    *  * *        
       3599 ATTATTACTGATATATAAAAAT
          1 ATTATTACCGACAAATAAAAAT

                                 
       3621 ATTATTACCGACAAATAAAAA
          1 ATTATTACCGACAAATAAAAA

       3642 AGGATAAAAG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33


Consensus pattern (22 bp):   
ATTATTACCGACAAATAAAAAT
Done.