Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009796.1 Corchorus olitorius cultivar O-4 contig09828, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3420
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:268 original size:6 final size:6

Alignment explanation


    Indices: 257--282  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        247 GAACCAGGGT

                                          
        257 GATGTC GATGTC GATGTC GATGTC GA
          1 GATGTC GATGTC GATGTC GATGTC GA

        283 AGTGCAGAGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.19, C:0.15, G:0.35, T:0.31


Consensus pattern (6 bp):   
GATGTC

Done.