Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009805.1 Corchorus olitorius cultivar O-4 contig09837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18778

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1917--1944
2
14.0
2
100
0
56
50
0
0
50
1.00
10393--10523
66
2.0
65
90
1
208
36
6
22
35
1.79
10664--10766
51
2.0
51
92
0
170
22
17
5
54
1.64
16677--16735
18
3.4
18
71
21
63
15
22
0
62
1.32
16668--16743
33
2.3
33
93
0
125
21
19
1
57
1.47
16677--16742
18
3.9
17
72
11
55
19
21
0
59
1.38
17013--17044
15
2.1
15
100
0
64
31
18
15
34
1.93
17403--17427
13
1.9
13
100
0
50
56
0
0
44
0.99
18427--18468
3
14.3
3
85
14
61
66
0
0
33
0.92
18742--18777
5
7.2
5
100
0
72
80
0
19
0
0.71
18725--18777
15
3.6
14
87
5
61
75
1
20
1
0.99

Tables:   1

The End!