Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009815.1 Corchorus olitorius cultivar O-4 contig09847, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1784
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29


Found at i:607 original size:13 final size:13

Alignment explanation


    Indices: 585--641  Score: 80
    Period size: 13  Copynumber: 4.4  Consensus size: 13

        575 GAACTGAAAA

                 *       
        585 CAGAAACTGATTT
          1 CAGAATCTGATTT

              *          
        598 CATAATCTGATTT
          1 CAGAATCTGATTT

                         
        611 CAGAATCTGATTT
          1 CAGAATCTGATTT

                          
        624 CAGATAT-TGATTT
          1 CAGA-ATCTGATTT

                 
        637 CAGAA
          1 CAGAA

        642 ACTACAAACA


Statistics
Matches: 40,  Mismatches: 3, Indels: 3
        0.87            0.07        0.07

Matches are distributed among these distances:
  12    1  0.03
  13   37  0.93
  14    2  0.05

ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Consensus pattern (13 bp):   
CAGAATCTGATTT

Done.