Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009820.1 Corchorus olitorius cultivar O-4 contig09852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2813
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.38


Found at i:1551 original size:36 final size:36

Alignment explanation


    Indices: 1506--1609  Score: 163
    Period size: 36  Copynumber: 2.9  Consensus size: 36

       1496 AACACCACGC

                          *                    *
       1506 GATTGAAATTCATGTAATTTAGGTTAAATTGTATTT
          1 GATTGAAATTCATGCAATTTAGGTTAAATTGTATTA

                *                               
       1542 GATTCAAATTCATGCAATTTAGGTTAAATTGTATTA
          1 GATTGAAATTCATGCAATTTAGGTTAAATTGTATTA

              *       *                     
       1578 GAATGAAATTTATGCAATTTAGGTTAAATTGT
          1 GATTGAAATTCATGCAATTTAGGTTAAATTGT

       1610 CTAAAAATAC


Statistics
Matches: 62,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  36   62  1.00

ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43


Consensus pattern (36 bp):   
GATTGAAATTCATGCAATTTAGGTTAAATTGTATTA

Found at i:2242 original size:2 final size:2

Alignment explanation


    Indices: 2235--2259  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       2225 AAATTTTCTT

                                                 
       2235 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       2260 TACTAGTATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.