Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009838.1 Corchorus olitorius cultivar O-4 contig09870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1794
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30


Found at i:567 original size:19 final size:21

Alignment explanation


    Indices: 536--584  Score: 57
    Period size: 19  Copynumber: 2.4  Consensus size: 21

        526 GAAGGAGGAG

                    *     *       
        536 GAGAAGAAGAAGAAGGAAA-AA
          1 GAGAA-AAAAAGAAAGAAAGAA

                                 
        557 GA-AAAAAAAGAAAGAAAGAA
          1 GAGAAAAAAAGAAAGAAAGAA

                    
        577 GAGAAAAA
          1 GAGAAAAA

        585 GGGGCCTACT


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  19   11  0.46
  20    6  0.25
  21    7  0.29

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (21 bp):   
GAGAAAAAAAGAAAGAAAGAA
Done.