Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009840.1 Corchorus olitorius cultivar O-4 contig09872, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2003
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:819 original size:22 final size:22

Alignment explanation


    Indices: 664--813  Score: 128
    Period size: 22  Copynumber: 6.9  Consensus size: 22

        654 TGAATATTTT

                                *  
        664 TATGAAATTTTGATAA-CTGCCC
          1 TATGAAATTTTGATAATCT-TCC

               *               *  
        686 TATTAAATTTTGATAAT-TACC
          1 TATGAAATTTTGATAATCTTCC

                     * *    *     
        707 TATGAAATTGTAATAAAC-TCC
          1 TATGAAATTTTGATAATCTTCC

                                ** 
        728 ATATGAAATTTTGATAATCTAAC
          1 -TATGAAATTTTGATAATCTTCC

                       *           
        751 TATGAAATTTTAATAAATCTTCC
          1 TATGAAATTTTGAT-AATCTTCC

                  *         *     
        774 TATG-ATTTTTGATAACCTTCC
          1 TATGAAATTTTGATAATCTTCC

                 *      *      
        795 TATGATATTTTGTTAATCT
          1 TATGAAATTTTGATAATCT

        814 CGCTATAATT


Statistics
Matches: 100,  Mismatches: 22, Indels: 12
        0.75            0.16        0.09

Matches are distributed among these distances:
  21   28  0.28
  22   61  0.61
  23   11  0.11

ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43


Consensus pattern (22 bp):   
TATGAAATTTTGATAATCTTCC
Done.