Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009841.1 Corchorus olitorius cultivar O-4 contig09873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10256
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:6720 original size:23 final size:23

Alignment explanation


    Indices: 6690--6735  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       6680 TTACACTTTC

                                   
       6690 GTTTGAAGACCAATAAATCAATA
          1 GTTTGAAGACCAATAAATCAATA

                     *             
       6713 GTTTGAAGATCAATAAATCAATA
          1 GTTTGAAGACCAATAAATCAATA

       6736 TATCATTCAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.48, C:0.11, G:0.13, T:0.28


Consensus pattern (23 bp):   
GTTTGAAGACCAATAAATCAATA

Found at i:7910 original size:20 final size:20

Alignment explanation


    Indices: 7885--7925  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       7875 AGCATCATAA

                                 
       7885 TTGTTTTGA-TAACCTTTAAT
          1 TTGTTTTGAGTAA-CTTTAAT

                   *            
       7905 TTGTTTTTAGTAACTTTAAT
          1 TTGTTTTGAGTAACTTTAAT

             
       7925 T
          1 T

       7926 AGATAAGAGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20   16  0.84
  21    3  0.16

ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59


Consensus pattern (20 bp):   
TTGTTTTGAGTAACTTTAAT

Done.