Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009845.1 Corchorus olitorius cultivar O-4 contig09877, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10144
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:110 original size:19 final size:19

Alignment explanation


    Indices: 86--122  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

         76 TCGTTTGGCA

                                
         86 TTGTTTT-TTGTTTTTTGTT
          1 TTGTTTTATT-TTTTTTGTT

                              
        105 TTGTTTTATTTTTTTTGT
          1 TTGTTTTATTTTTTTTGT

        123 GCTGTCAATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19   15  0.88
  20    2  0.12

ACGTcount: A:0.03, C:0.00, G:0.14, T:0.84


Consensus pattern (19 bp):   
TTGTTTTATTTTTTTTGTT
Done.