Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009847.1 Corchorus olitorius cultivar O-4 contig09879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4413
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:3016 original size:2 final size:2

Alignment explanation


    Indices: 3009--3050  Score: 84
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       2999 ATGAAAATTG

                                                                          
       3009 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3051 AGTGGTTTTC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   40  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.