Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009849.1 Corchorus olitorius cultivar O-4 contig09881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7018
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:362 original size:21 final size:21

Alignment explanation


    Indices: 337--376  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        327 AATTATATTA

                       *         
        337 TGTAATTCATAGTTAAATTTG
          1 TGTAATTCATAATTAAATTTG

                               
        358 TGTAATTCATAATTAAATT
          1 TGTAATTCATAATTAAATT

        377 GTATCAATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47


Consensus pattern (21 bp):   
TGTAATTCATAATTAAATTTG

Found at i:385 original size:21 final size:21

Alignment explanation


    Indices: 339--385  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        329 TTATATTATG

                     *          *
        339 TAATTCATAGTTAAATTTGTG
          1 TAATTCATAATTAAATTTGTA

                                 
        360 TAATTCATAATTAAA-TTGTA
          1 TAATTCATAATTAAATTTGTA

                  
        380 TCAATT
          1 T-AATT

        386 TCAAATGGAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  20    5  0.22
  21   18  0.78

ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47


Consensus pattern (21 bp):   
TAATTCATAATTAAATTTGTA
Done.