Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009853.1 Corchorus olitorius cultivar O-4 contig09885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3979

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
191--224
8
4.4
8
85
7
52
38
2
0
58
1.13
361--408
23
2.1
23
92
0
78
31
47
18
2
1.60
398--517
16
7.6
16
88
4
181
40
40
14
5
1.70
1425--1484
26
2.4
25
77
11
68
45
3
1
50
1.28
1556--1594
20
2.0
20
85
10
53
28
5
2
64
1.28
1760--1908
22
6.9
22
70
13
103
35
11
18
34
1.86
1761--1861
44
2.3
44
82
3
114
36
9
17
35
1.83
1752--1942
66
2.9
66
80
13
225
33
10
18
36
1.86
2025--2074
22
2.2
23
78
3
57
32
6
20
42
1.76
2194--2252
22
2.7
23
87
7
79
40
5
11
42
1.64
2238--2384
22
6.7
22
67
6
64
42
8
13
34
1.75
2214--2362
66
2.3
66
78
4
149
40
8
14
36
1.75
2685--2767
23
3.7
23
84
7
98
36
8
16
38
1.79
2533--2767
22
10.9
22
70
14
125
39
8
17
35
1.79
2729--2797
22
3.1
22
82
0
75
33
10
18
37
1.85

Tables:   1

The End!