Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009855.1 Corchorus olitorius cultivar O-4 contig09887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2470
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32


Found at i:176 original size:20 final size:17

Alignment explanation


    Indices: 134--167  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        124 TTACTTTTCT

                             
        134 TAATTATTTTTAGATTA
          1 TAATTATTTTTAGATTA

                       *     
        151 TAATTATTTTTTGATTA
          1 TAATTATTTTTAGATTA

        168 AAATAATTAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62


Consensus pattern (17 bp):   
TAATTATTTTTAGATTA
Done.