Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009858.1 Corchorus olitorius cultivar O-4 contig09890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1561
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:226 original size:14 final size:14

Alignment explanation


    Indices: 207--233  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        197 CAAGTGCCAA

                          
        207 AAAAAAAACAAAAC
          1 AAAAAAAACAAAAC

                         
        221 AAAAAAAACAAAA
          1 AAAAAAAACAAAA

        234 AAAGGTTAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00


Consensus pattern (14 bp):   
AAAAAAAACAAAAC
Done.