Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009860.1 Corchorus olitorius cultivar O-4 contig09892, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26426
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:4378 original size:29 final size:29

Alignment explanation


    Indices: 4336--4394  Score: 100
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       4326 ATATGCCAAC

                                  *      
       4336 TAAATAAGATGAAACAGTGCACCTAGGTT
          1 TAAATAAGATGAAACAGTGCACATAGGTT

                          *              
       4365 TAAATAAGATGAAATAGTGCACATAGGTT
          1 TAAATAAGATGAAACAGTGCACATAGGTT

             
       4394 T
          1 T

       4395 TAGAGATTAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.42, C:0.10, G:0.20, T:0.27


Consensus pattern (29 bp):   
TAAATAAGATGAAACAGTGCACATAGGTT
Done.