Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009861.1 Corchorus olitorius cultivar O-4 contig09893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4273
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:2868 original size:19 final size:18

Alignment explanation


    Indices: 2846--2897  Score: 59
    Period size: 19  Copynumber: 2.8  Consensus size: 18

       2836 GGGCTGAAAT

                               
       2846 TAATTAATTATTAAATAAA
          1 TAATT-ATTATTAAATAAA

                        ***    
       2865 TAATTATTATTTTCTTAAA
          1 TAATTATTA-TTAAATAAA

                          
       2884 TAATTATTATTAAA
          1 TAATTATTATTAAA

       2898 AATTCCACAT


Statistics
Matches: 26,  Mismatches: 6, Indels: 3
        0.74            0.17        0.09

Matches are distributed among these distances:
  18    6  0.23
  19   20  0.77

ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50


Consensus pattern (18 bp):   
TAATTATTATTAAATAAA
Done.