Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009865.1 Corchorus olitorius cultivar O-4 contig09897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2035
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32


Found at i:1383 original size:34 final size:37

Alignment explanation


    Indices: 1315--1384  Score: 101
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       1305 GCTGCCTTGT

                                 *                
       1315 GCGCGGGCTAAGGCAGCAGCAGCGACCTGCTGCTGCGC
          1 GCGCGGGCTAAGGCAGCAGCAACGACCT-CTGCTGCGC

                                               
       1353 GCGCGGGCT-AGGCAGCAGCAACGA-CT-TGCTGC
          1 GCGCGGGCTAAGGCAGCAGCAACGACCTCTGCTGC

       1385 TTGGTGCGGA


Statistics
Matches: 31,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  34    6  0.19
  36    2  0.06
  37   14  0.45
  38    9  0.29

ACGTcount: A:0.17, C:0.33, G:0.39, T:0.11


Consensus pattern (37 bp):   
GCGCGGGCTAAGGCAGCAGCAACGACCTCTGCTGCGC
Done.