Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009868.1 Corchorus olitorius cultivar O-4 contig09900, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3846
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:2550 original size:3 final size:3

Alignment explanation


    Indices: 2544--2573  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       2534 TGTTTATGAT

                                                   
       2544 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

       2574 TATTTCCTAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
GAA

Done.