Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009871.1 Corchorus olitorius cultivar O-4 contig09903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7011

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2850--2986
56
2.4
56
85
6
179
39
23
19
17
1.92
2852--3011
29
5.6
29
82
2
164
38
24
18
18
1.93
2852--3002
57
2.6
57
80
9
164
39
22
18
19
1.93
3287--3389
50
2.1
50
94
0
179
28
15
28
28
1.96
3367--3412
23
2.0
23
91
0
74
41
15
19
23
1.89
3317--3462
73
2.0
73
93
0
247
32
15
25
27
1.95
3390--3935
50
10.9
50
93
1
923
29
12
26
30
1.93
3287--3512
123
1.8
123
97
0
425
29
14
27
29
1.95
4088--4117
12
2.5
12
94
0
51
53
16
6
23
1.66
4018--4195
91
2.0
91
88
5
272
38
14
17
29
1.90
4330--4391
26
2.4
26
100
0
124
8
24
11
56
1.61
4733--4880
50
3.0
50
90
2
217
37
13
16
31
1.88
5993--6017
8
3.1
8
100
0
50
12
12
0
76
1.04

Tables:   1

The End!