Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009872.1 Corchorus olitorius cultivar O-4 contig09904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6554
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:4507 original size:23 final size:23

Alignment explanation


    Indices: 4477--4522  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       4467 AACCCAGAAG

                      *            
       4477 CAGAAACTTACCAATTTCAACTT
          1 CAGAAACTTAACAATTTCAACTT

                                   
       4500 CAGAAACTTAACAATTTCAACTT
          1 CAGAAACTTAACAATTTCAACTT

       4523 TCCCTAGAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.41, C:0.24, G:0.04, T:0.30


Consensus pattern (23 bp):   
CAGAAACTTAACAATTTCAACTT
Done.