Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009873.1 Corchorus olitorius cultivar O-4 contig09905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3193
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:2725 original size:23 final size:23

Alignment explanation


    Indices: 2699--2742  Score: 54
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       2689 TTAAATCTAA

                *                   
       2699 TATCCTTATACCT-ATTTTATTTT
          1 TATCATTATA-CTAATTTTATTTT

                   *             
       2722 TATCATTCTACTAATTTTATT
          1 TATCATTATACTAATTTTATT

       2743 AAAAAACTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22    2  0.11
  23   16  0.89

ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59


Consensus pattern (23 bp):   
TATCATTATACTAATTTTATTTT
Done.