Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009874.1 Corchorus olitorius cultivar O-4 contig09906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2196
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27


Found at i:830 original size:12 final size:13

Alignment explanation


    Indices: 800--842  Score: 52
    Period size: 12  Copynumber: 3.3  Consensus size: 13

        790 TCATGCACCC

                        * 
        800 AAAACAATTTATTT
          1 AAAACAATTTA-AT

                 *       
        814 AAAACCATTT-AT
          1 AAAACAATTTAAT

                         
        826 AAAACAATTTAAT
          1 AAAACAATTTAAT

                
        839 AAAA
          1 AAAA

        843 TAGTAATAAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  12   10  0.40
  13    6  0.24
  14    9  0.36

ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33


Consensus pattern (13 bp):   
AAAACAATTTAAT
Done.