Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009875.1 Corchorus olitorius cultivar O-4 contig09907, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2175
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Found at i:763 original size:2 final size:2

Alignment explanation


    Indices: 751--792  Score: 70
    Period size: 2  Copynumber: 22.0  Consensus size: 2

        741 AAAATACCAC

                                                                          
        751 TA TA T- TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
        791 TA
          1 TA

        793 AGTCGAGACA


Statistics
Matches: 38,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    2  0.05
   2   36  0.95

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.