Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009878.1 Corchorus olitorius cultivar O-4 contig09910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2437
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27


Found at i:55 original size:11 final size:11

Alignment explanation


    Indices: 39--63  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

         29 GGGGAGATTG

                       
         39 TTTATTTTCTT
          1 TTTATTTTCTT

                       
         50 TTTATTTTCTT
          1 TTTATTTTCTT

               
         61 TTT
          1 TTT

         64 CTATTTGATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84


Consensus pattern (11 bp):   
TTTATTTTCTT
Done.