Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009882.1 Corchorus olitorius cultivar O-4 contig09914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3163
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:952 original size:25 final size:25

Alignment explanation


    Indices: 918--966  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        908 CCAAACAATC

                                     
        918 TTGAGCACTCTCGCTCGGTCTCTAT
          1 TTGAGCACTCTCGCTCGGTCTCTAT

                                    
        943 TTGAGCACTCTCGCTCGGTCTCTA
          1 TTGAGCACTCTCGCTCGGTCTCTA

        967 CAAACTAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.12, C:0.33, G:0.20, T:0.35


Consensus pattern (25 bp):   
TTGAGCACTCTCGCTCGGTCTCTAT
Done.