Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009888.1 Corchorus olitorius cultivar O-4 contig09920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16808

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
930--1011
34
2.3
36
87
6
114
41
0
12
46
1.41
959--1028
20
3.5
20
90
3
106
44
1
8
45
1.43
1003--1044
16
2.6
16
88
0
57
40
4
9
45
1.58
953--1028
2
38.0
2
76
10
75
44
1
7
46
1.41
1291--1329
20
2.0
20
100
0
78
25
15
7
51
1.70
5700--5728
10
2.9
10
100
0
58
0
10
0
89
0.48
7626--7650
13
1.9
13
100
0
50
24
8
12
56
1.62
8435--8819
199
1.9
197
84
5
517
28
17
17
36
1.93
10392--10428
19
1.9
19
94
0
65
59
29
2
8
1.40
12935--13069
49
2.8
50
86
4
177
28
17
4
49
1.66
15963--15990
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!