Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000989.1 Corchorus olitorius cultivar O-4 contig00989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1337
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39


Found at i:362 original size:2 final size:2

Alignment explanation


    Indices: 357--390  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        347 TTACACACAC

                                  *                           
        357 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        391 TAAGGTTTAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.