Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009891.1 Corchorus olitorius cultivar O-4 contig09923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36


Found at i:1357 original size:13 final size:13

Alignment explanation


    Indices: 1339--1363  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1329 TAAAGGTTTG

                         
       1339 TAATCCCTTTATA
          1 TAATCCCTTTATA

                        
       1352 TAATCCCTTTAT
          1 TAATCCCTTTAT

       1364 GTTAACATCT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48


Consensus pattern (13 bp):   
TAATCCCTTTATA
Done.