Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009894.1 Corchorus olitorius cultivar O-4 contig09926, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3059
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37


Found at i:2081 original size:11 final size:11

Alignment explanation


    Indices: 2067--2101  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       2057 TTGAAAACGT

                       
       2067 AACAAAAACAA
          1 AACAAAAACAA

                    ** 
       2078 AACAAAAATGA
          1 AACAAAAACAA

                       
       2089 AACAAAAACAA
          1 AACAAAAACAA

              
       2100 AA
          1 AA

       2102 AACAAAAAAA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.80, C:0.14, G:0.03, T:0.03


Consensus pattern (11 bp):   
AACAAAAACAA

Found at i:2085 original size:22 final size:22

Alignment explanation


    Indices: 2060--2101  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2050 AAGAAAATTG

                  *               
       2060 AAAACGTAACAAAAACAAAACA
          1 AAAACGAAACAAAAACAAAACA

                *               
       2082 AAAATGAAACAAAAACAAAA
          1 AAAACGAAACAAAAACAAAA

       2102 AACAAAAAAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.76, C:0.14, G:0.05, T:0.05


Consensus pattern (22 bp):   
AAAACGAAACAAAAACAAAACA
Done.