Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009896.1 Corchorus olitorius cultivar O-4 contig09928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1913
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Found at i:384 original size:9 final size:9

Alignment explanation


    Indices: 366--403  Score: 60
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        356 TTAATTCATT

                     
        366 TAATTT-CA
          1 TAATTTCCA

                     
        374 TAATTTCCA
          1 TAATTTCCA

                    *
        383 TAATTTCCT
          1 TAATTTCCA

                     
        392 TAATTTCCA
          1 TAATTTCCA

               
        401 TAA
          1 TAA

        404 GTAATTTGGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8    6  0.22
   9   21  0.78

ACGTcount: A:0.34, C:0.18, G:0.00, T:0.47


Consensus pattern (9 bp):   
TAATTTCCA
Done.