Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009899.1 Corchorus olitorius cultivar O-4 contig09931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3180
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28


Found at i:2581 original size:16 final size:15

Alignment explanation


    Indices: 2543--2584  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2533 ACAGAGGTTG

                           
       2543 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                           
       2558 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       2573 ACTAGAAAACAA
          1 AC-AGAAAACAA

       2585 AACAAAGTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.67, C:0.14, G:0.07, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.