Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000099.1 Corchorus olitorius cultivar O-4 contig00099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37


Found at i:468 original size:29 final size:29

Alignment explanation


    Indices: 418--481  Score: 83
    Period size: 29  Copynumber: 2.2  Consensus size: 29

        408 AGATTTATAA

                           * *        * *
        418 GGAATTATGTAACACGTTTATTGGTAGAT
          1 GGAATTATGTAACACATATATTGGTAAAC

                       *                 
        447 GGAATTATGTAGCACATATATTGGTAAAC
          1 GGAATTATGTAACACATATATTGGTAAAC

                  
        476 GGAATT
          1 GGAATT

        482 TTAATGATTA


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.34, C:0.08, G:0.23, T:0.34


Consensus pattern (29 bp):   
GGAATTATGTAACACATATATTGGTAAAC
Done.