Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009908.1 Corchorus olitorius cultivar O-4 contig09940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1724
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:1678 original size:20 final size:20

Alignment explanation


    Indices: 1653--1692  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1643 TGAAGCCCTT

                                 
       1653 ATTGGAGAC-AAGTGGTACTA
          1 ATTGGA-ACTAAGTGGTACTA

                  *             
       1673 ATTGGATCTAAGTGGTACTA
          1 ATTGGAACTAAGTGGTACTA

       1693 GGGTTTCTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    1  0.06
  20   17  0.94

ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30


Consensus pattern (20 bp):   
ATTGGAACTAAGTGGTACTA
Done.