Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009909.1 Corchorus olitorius cultivar O-4 contig09941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3064
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37


Found at i:189 original size:16 final size:16

Alignment explanation


    Indices: 168--211  Score: 63
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        158 GACAATTGGG

                          * 
        168 CGGGTTTGGGCTCTTT
          1 CGGGTTTGGGCTCTCT

                  *         
        184 CGGGTTCGGGCTCTCT
          1 CGGGTTTGGGCTCTCT

                         
        200 CGGG-TTGGGCTC
          1 CGGGTTTGGGCTC

        212 GGGTTGAGGT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  15    7  0.28
  16   18  0.72

ACGTcount: A:0.00, C:0.25, G:0.41, T:0.34


Consensus pattern (16 bp):   
CGGGTTTGGGCTCTCT

Done.