Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009915.1 Corchorus olitorius cultivar O-4 contig09947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3668
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34


Found at i:2936 original size:21 final size:20

Alignment explanation


    Indices: 2905--2944  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       2895 TTTTTCTCTT

                                
       2905 CTCTCATTTCTCTCTCTTCC
          1 CTCTCATTTCTCTCTCTTCC

                        *       
       2925 CTCTCGATTTCTTTCTCTTC
          1 CTCTC-ATTTCTCTCTCTTC

       2945 TCCCTTTCTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.05, C:0.40, G:0.03, T:0.53


Consensus pattern (20 bp):   
CTCTCATTTCTCTCTCTTCC

Found at i:2948 original size:23 final size:26

Alignment explanation


    Indices: 2911--2959  Score: 68
    Period size: 24  Copynumber: 2.0  Consensus size: 26

       2901 TCTTCTCTCA

                                      
       2911 TTTCTCTCTCTTCCCTCTC-GATTTC
          1 TTTCTCTCTCTTCCCTCTCTGATTTC

                            *         
       2936 TTTCTCT-TC-TCCCTTTCTGATTTC
          1 TTTCTCTCTCTTCCCTCTCTGATTTC

       2960 AACTTCAAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  23    7  0.32
  24    8  0.36
  25    7  0.32

ACGTcount: A:0.04, C:0.37, G:0.04, T:0.55


Consensus pattern (26 bp):   
TTTCTCTCTCTTCCCTCTCTGATTTC
Done.