Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009916.1 Corchorus olitorius cultivar O-4 contig09948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2331
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:1624 original size:13 final size:13

Alignment explanation


    Indices: 1606--1631  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1596 CTTGGAATGA

                         
       1606 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
       1619 GTGATGATTTTTG
          1 GTGATGATTTTTG

       1632 TTGTTACCAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG
Done.