Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009920.1 Corchorus olitorius cultivar O-4 contig09952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2246
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:414 original size:21 final size:21

Alignment explanation


    Indices: 373--415  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        363 CTTGTAATCT

                            *    
        373 AAAGTTACTAAAAAGTTTATA
          1 AAAGTTACTAAAAAGTCTATA

                   *              
        394 AAAGTTATTAAAATAG-CTATA
          1 AAAGTTACTAAAA-AGTCTATA

             
        415 A
          1 A

        416 TGCTTTTCAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33


Consensus pattern (21 bp):   
AAAGTTACTAAAAAGTCTATA
Done.