Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009927.1 Corchorus olitorius cultivar O-4 contig09959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35


Found at i:1004 original size:24 final size:24

Alignment explanation


    Indices: 977--1027  Score: 68
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        967 ATAATAATTA

                        *            
        977 TAATAATAATAATAATAAGGA-GTT
          1 TAATAATAATAACAATAA-GATGTT

                   *                
       1001 TAATAATTATAACAATAAGATGTT
          1 TAATAATAATAACAATAAGATGTT

               
       1025 TAA
          1 TAA

       1028 CGTAAAAATA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  23    2  0.08
  24   22  0.92

ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35


Consensus pattern (24 bp):   
TAATAATAATAACAATAAGATGTT

Found at i:1007 original size:3 final size:3

Alignment explanation


    Indices: 960--994  Score: 52
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        950 TAATGACAAT

                               *                          
        960 ATA ACTA ATA ATA ATT ATA ATA ATA ATA ATA ATA A
          1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA A

        995 GGAGTTTAAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   3   26  0.90
   4    3  0.10

ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATA

Done.