Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009931.1 Corchorus olitorius cultivar O-4 contig09963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2764
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:1734 original size:21 final size:21

Alignment explanation


    Indices: 1705--1759  Score: 76
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1695 GGCACTGAAT

                *                 
       1705 GGTGATGGCACGGGCATAG-CC
          1 GGTGGTGGCACGGGC-TAGACC

                            *    
       1726 GGTGGTGGCACGGGCTTGACC
          1 GGTGGTGGCACGGGCTAGACC

                         
       1747 GGTGGTGGCACGG
          1 GGTGGTGGCACGG

       1760 TGAATGGGCG


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  20    2  0.06
  21   29  0.94

ACGTcount: A:0.13, C:0.22, G:0.49, T:0.16


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCTAGACC
Done.