Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009932.1 Corchorus olitorius cultivar O-4 contig09964, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2081
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:1159 original size:42 final size:42

Alignment explanation


    Indices: 1099--1178  Score: 119
    Period size: 42  Copynumber: 1.9  Consensus size: 42

       1089 TTCCTCGAGT

                                                       
       1099 TCATCTTTTTCTAATCAGTC-CTTTTCTCCAAATATTTCCTCA
          1 TCATCTTTTTCTAATCAGTCTC-TTTCTCCAAATATTTCCTCA

                                            *      
       1141 TCAT-TTTCTTCTAATCAGTCTCTTTCTCCAAGTATTTC
          1 TCATCTTT-TTCTAATCAGTCTCTTTCTCCAAATATTTC

       1179 TTCCTCGTCC


Statistics
Matches: 35,  Mismatches: 1, Indels: 4
        0.88            0.03        0.10

Matches are distributed among these distances:
  41    3  0.09
  42   31  0.89
  43    1  0.03

ACGTcount: A:0.20, C:0.28, G:0.04, T:0.49


Consensus pattern (42 bp):   
TCATCTTTTTCTAATCAGTCTCTTTCTCCAAATATTTCCTCA
Done.