Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009936.1 Corchorus olitorius cultivar O-4 contig09968, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3169
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2725 original size:16 final size:16

Alignment explanation


    Indices: 2706--2740  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       2696 ATGATCCAAA

                            
       2706 TAAATAATGACAGTTT
          1 TAAATAATGACAGTTT

                            
       2722 TAAATAATGACAGTTT
          1 TAAATAATGACAGTTT

               
       2738 TAA
          1 TAA

       2741 CTCATTGACG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37


Consensus pattern (16 bp):   
TAAATAATGACAGTTT
Done.