Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009938.1 Corchorus olitorius cultivar O-4 contig09970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.37


Found at i:790 original size:38 final size:38

Alignment explanation


    Indices: 691--838  Score: 226
    Period size: 38  Copynumber: 3.9  Consensus size: 38

        681 GGCTGTGCAT

                                          *        
        691 AGTGGACCCGTACCTCAGGGGGTTAAACTGATGGTAAAG
          1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGT-AAG

                     *    *                       
        730 AGTGGACCCATACCACAGGGGGTTAAACTGTTGGTAAG
          1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG

                       *     *                    
        768 AGTGGACCCGTGCCTCAAGGGGTTAAACTGTTGGTAAG
          1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG

                       *                      
        806 AGTGGACCCGTGCCTCAGGGGGTT-AACTGTTGG
          1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGG

        839 CTAGACTCGA


Statistics
Matches: 101,  Mismatches: 8, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  37    9  0.09
  38   60  0.59
  39   32  0.32

ACGTcount: A:0.24, C:0.19, G:0.34, T:0.22


Consensus pattern (38 bp):   
AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG
Done.