Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009939.1 Corchorus olitorius cultivar O-4 contig09971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2999
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:1588 original size:14 final size:14

Alignment explanation


    Indices: 1569--1595  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1559 TTTCACCAAA

                          
       1569 CAAACATGGGTATC
          1 CAAACATGGGTATC

                         
       1583 CAAACATGGGTAT
          1 CAAACATGGGTAT

       1596 ATCACAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22


Consensus pattern (14 bp):   
CAAACATGGGTATC
Done.