Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009947.1 Corchorus olitorius cultivar O-4 contig09979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3502
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:2669 original size:19 final size:18

Alignment explanation


    Indices: 2645--2680  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2635 TGAAGATTTA

                               
       2645 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                    *        
       2664 TTGAAGACCATTGAAGA
          1 TTGAAGACAATTGAAGA

       2681 ATAATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT
Done.