Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009954.1 Corchorus olitorius cultivar O-4 contig09986, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2014
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37


Found at i:495 original size:6 final size:6

Alignment explanation


    Indices: 481--537  Score: 53
    Period size: 6  Copynumber: 9.5  Consensus size: 6

        471 TTTTAGTTTA

                *                    *   *  *      *                
        481 TTTTAT TTTTCT TTTTCT CTTTCCT CTTCCT TTTCCT TTTTCT TTTT-T
          1 TTTTCT TTTTCT TTTTCT -TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT

                      
        529 TTTTCT TTT
          1 TTTTCT TTT

        538 CCCTTGGGCC


Statistics
Matches: 44,  Mismatches: 5, Indels: 4
        0.83            0.09        0.08

Matches are distributed among these distances:
   5    5  0.11
   6   34  0.77
   7    5  0.11

ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77


Consensus pattern (6 bp):   
TTTTCT

Done.