Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009958.1 Corchorus olitorius cultivar O-4 contig09990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3077
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:2645 original size:17 final size:17

Alignment explanation


    Indices: 2620--2652  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       2610 GTTTTTGAAT

                             
       2620 TAAAGAAACAATAAAAA
          1 TAAAGAAACAATAAAAA

                *           
       2637 TAAATAAACAATAAAA
          1 TAAAGAAACAATAAAA

       2653 TAATAAAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15


Consensus pattern (17 bp):   
TAAAGAAACAATAAAAA
Done.