Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009960.1 Corchorus olitorius cultivar O-4 contig09992, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1637
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:499 original size:30 final size:30

Alignment explanation


    Indices: 463--522  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        453 CAGTTCTTCA

                   *                      
        463 GGTGCAAGAAGTAATCGATTATAGGGTTTT
          1 GGTGCAAAAAGTAATCGATTATAGGGTTTT

                                          
        493 GGTGCAAAAAGTAATCGATTATAGGGTTTT
          1 GGTGCAAAAAGTAATCGATTATAGGGTTTT

        523 ACTGAGATTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33


Consensus pattern (30 bp):   
GGTGCAAAAAGTAATCGATTATAGGGTTTT
Done.