Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009983.1 Corchorus olitorius cultivar O-4 contig10015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3126
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.32


Found at i:1564 original size:21 final size:20

Alignment explanation


    Indices: 1540--1578  Score: 60
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1530 TACATAGAGA

                   *             
       1540 AAATGTTTTATCTGAAGAAAT
          1 AAATGTTATATCT-AAGAAAT

                              
       1561 AAATGTTATATCTAAGAA
          1 AAATGTTATATCTAAGAA

       1579 TCCTACCGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    5  0.29
  21   12  0.71

ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36


Consensus pattern (20 bp):   
AAATGTTATATCTAAGAAAT
Done.