Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009984.1 Corchorus olitorius cultivar O-4 contig10016, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1888
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23


Found at i:426 original size:15 final size:15

Alignment explanation


    Indices: 373--428  Score: 51
    Period size: 15  Copynumber: 3.6  Consensus size: 15

        363 TCCGAACCGT

                         *  
        373 ATGACCCGAAACCGAA
          1 ATGACCCG-AACCCAA

             *     *        
        389 ACGA-CCAAACCCAGA
          1 ATGACCCGAACCCA-A

                            
        404 ATTGACCCGAACCCAA
          1 A-TGACCCGAACCCAA

                     
        420 ATGACCCGA
          1 ATGACCCGA

        429 CATTTGAACG


Statistics
Matches: 32,  Mismatches: 5, Indels: 7
        0.73            0.11        0.16

Matches are distributed among these distances:
  14    5  0.16
  15   12  0.38
  16    7  0.22
  17    8  0.25

ACGTcount: A:0.41, C:0.36, G:0.16, T:0.07


Consensus pattern (15 bp):   
ATGACCCGAACCCAA
Done.